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Hypoxia-induced metastatic heterogeneity in pancreatic cancer
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Hypoxia-induced metastatic heterogeneity in pancreatic cancer

Pradeep Moon Gunasekaran, Qianqian Wang, Yoke-Chen Chang +18 more
August 2025
 ·
bioRxiv
 ·
DOI 
10.1101/2025.08.26.672389
94
%
Reproducible
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It ranks in the top 1% of preprints assessed in Cell Biology this quarter.
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Why this is interesting

This work establishes KDM8 as the central oxygen-sensitive epigenetic rheostat that coordinates both transcriptional plasticity and chromosomal instability in pancreatic cancer, converting hypoxia from an environmental correlate into a mechanistically actionable driver of metastasis.

QED claims analysis

Summary

Hypoxia promotes pancreatic cancer metastasis by suppressing the histone demethylase KDM8, which simultaneously drives epithelial-to-mesenchymal transition through global epigenetic reprogramming and accelerates chromosomal instability leading to oncogenic KRAS amplification, while hypermorphic KDM8 variants resistant to hypoxic suppression markedly reduce metastasis beyond wildtype levels.

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Main Claim 1 –

KDM8 Suppresses Metastasis in Pancreatic Ductal Adenocarcinoma

Supporting evidence

  • CRISPR Autochthonous PDA Model Achieves High-Penetrance Kdm8 Targeting
Main Claim 2 –

Autochthonous CRISPR Kdm8 Loss Drives Widespread Pancreatic Metastasis

Supporting evidence

  • Kdm8 Loss Reduces Differentiation Markers and Induces EMT in Tumors
  • Metastases Enrich Advanced Malignant Programs in Kdm8-Deficient Tumors
  • Kdm8-Negative Cells Shift Toward Advanced Malignant States In Vivo
Main Claim 3 –

Kdm8 Knockdown Mimics Hypoxia-Induced Transcriptomic Reprogramming in Normoxia

Supporting evidence

  • Hypermorphic Kdm8 Resists Hypoxia and Blocks Transcriptomic Rewiring
Main Claim 4 –

Hypermorphic Kdm8 Demethylase Variants Suppress Metastasis Beyond Wildtype

Supporting evidence

  • KDM8-Induced Signature Predicts Better Survival and Fewer Metastases

Abstract

In most solid tumors, hypoxia constitutes a defining microenvironmental feature that reprograms malignant cells into a highly metastatic state by driving cellular plasticity and exacerbating chromosomal instability (CIN). However, the mechanisms by which cancer cells concurrently co-opt these elements of hypoxic adaptation to promote metastasis remains poorly understood. Here, we report that hypoxia promotes metastasis by suppressing the JmjC-containing histone lysine demethylase Kdm8. CRISPR/Cas9-mediated targeting of Kdm8 in a Kras;Trp53-driven mouse model of pancreatic ductal adenocarcinoma (PDA) robustly rewires the malignant cell transcriptomic programs, leading to a profound loss of the epithelial morphology and widespread metastatic disease. In PDA patients, a high KDM8-induced gene signature is associated with reduced metastatic burden and better survival in advanced disease. Notably, Kdm8 suppression in normoxia recapitulates key aspects of the global epigenetic and transcriptomic rewiring, mitotic spindle defects, and CIN induced by hypoxia. Moreover, disruption of Kdm8’s demethylase activity phenocopies Kdm8 loss, whereas expression of hypermorphic Kdm8 variants resistant to hypoxic suppression markedly reduces metastasis beyond the levels achieved by the wildtype protein. Through the suppression of Kdm8 demethylase function, hypoxia unleashes a potent metastatic program by simultaneously advancing cellular plasticity and CIN.

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