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Dual Engram Architecture within a Single Striatal Cell Type Distinctly Controls Alcohol Relapse and Extinction
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Dual Engram Architecture within a Single Striatal Cell Type Distinctly Controls Alcohol Relapse and Extinction

Xueyi Xie, Yufei Huang, Ruifeng Chen +11 more
January 2026
 ·
bioRxiv
 ·
DOI 
10.64898/2026.01.13.699375
94
%
Reproducible
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Why this is interesting

Overturning the direct/indirect pathway dichotomy, this study shows that relapse and extinction memories are encoded by distinct engrams within a single striatal cell type, with potentiated corticostriatal synapses sufficient to write a relapse memory.

QED claims analysis

Summary

Acquisition and extinction of operant alcohol learning recruit anatomically and functionally distinct engram ensembles within the same striatal cell type—direct-pathway medium spiny neurons—where matrix-enriched ensembles encode relapse-promoting memories through persistent mPFC-to-dMSN synaptic potentiation, while striosome-enriched ensembles encode extinction memories that actively suppress relapse, establishing a dual-engram architecture in which opposing alcohol-associated memories compete for behavioral control within a single genetically defined neuronal population.

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Main Claim 1 –

Alcohol acquisition and extinction recruit distinct dMSN engrams

Supporting evidence

  • Extinction dMSN engrams localize to striosomes; acquisition to matrix
  • Extinction-recruited dMSNs more strongly inhibit SNc dopamine neurons
  • Acquisition-recruited dMSNs reinforce operant responding; extinction dMSNs do not
Main Claim 2 –

Acquisition-recruited dMSNs are required for alcohol cue reinstatement

Supporting evidence

  • Alcohol acquisition dMSN engram does not generalize to sucrose seeking
  • Home-cage–tagged dMSNs do not regulate alcohol relapse
Main Claim 3 –

Activating extinction-recruited dMSNs suppresses alcohol relapse

Supporting evidence

  • Alcohol extinction dMSN engram does not alter sucrose behaviors
Main Claim 4 –

Alcohol induces persistent mPFC–dMSN potentiation exceeding sucrose plasticity

Supporting evidence

  • Alcohol strengthens synapses from activated mPFC neurons onto dMSNs

Abstract

Relapse is a major obstacle in the treatment of alcohol and drug addiction and is thought to be driven by persistent drug-associated memories formed during their use. Behavioral therapies such as extinction training can reduce relapse and are proposed to work by creating a competing memory trace. However, where and how these opposing memories are stored in the brain is unknown. Here, we show that two anatomically and functionally distinct engram ensembles within the same genetically defined striatal cell type, direct-pathway medium spiny neurons (dMSNs), encode these opposing memories. Using engram-tagging tools in mice, we found that the acquisition of operant alcohol learning recruits a dMSN ensemble enriched in the striatal matrix compartment that stores alcohol-associated memories and whose activation selectively promotes relapse. Conversely, extinction of alcohol seeking recruits a dMSN ensemble enriched in the striosome compartment that stores extinction-related memories and whose activation suppresses relapse. Furthermore, we reveal that the physical memory trace storing the relapse-promoting memory is embedded within persistently strengthened corticostriatal synapses engaged during learning, and that artificially reproducing this plasticity is sufficient to trigger relapse-like behavior. These findings uncover a dual-engram architecture within dMSNs that governs relapse and extinction, providing a mechanistic framework for understanding how competing memories regulate drug-seeking behavior.

Highlights

Acquisition and extinction of alcohol learning recruits distinct dMSN ensembles.

Acquisition recruits matrix-enriched dMSN ensembles to promote relapse.

Extinction recruits striosome-enriched dMSN ensembles to suppress relapse.

Engram dMSNs show lasting synaptic potentiation and mimicking this potentiation triggers relapse.

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