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Unwinding of RNA G-quadruplexes induces mouse and human totipotency
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Unwinding of RNA G-quadruplexes induces mouse and human totipotency

Yicong Dai, Xucong Teng, Qiushuang Zhang +18 more
February 2026
 ·
bioRxiv
 ·
DOI 
10.64898/2026.02.13.703305
94
%
Reproducible
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This paper passed independent validation.
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It ranks in the top 1% of preprints assessed in Cell Biology this quarter.
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Why this is interesting

By showing a single RNA G-quadruplex unwinder induces totipotency through conserved GATA2 translation, this work overturns multi-factor reprogramming dogma and establishes RNA secondary structure as a druggable axis governing the most fundamental cellular transitions in development.

QED claims analysis

Summary

Chemical unwinding of RNA G-quadruplex structures by the small molecule FC3 induces and maintains totipotent stem cells from mouse and human embryonic stem cells through enhanced translation of GATA2 mRNA, enabling these cells to contribute to both embryonic and extraembryonic lineages in chimeric embryos and autonomously self-organize into functional blastoids, thereby establishing RNA G-quadruplex remodeling as a conserved regulatory mechanism governing mammalian totipotency.

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Main Claim 1 –

FC3 rG4 unwinding reprograms mESCs into totipotent stem cells

Supporting evidence

  • FC3 prolongs totipotency markers in preimplantation mouse embryos
  • SLFM conditions optimize FC3-driven totipotency induction efficiency
Main Claim 2 –

mG4TotiSCs show 2-cell blastomere-like transcriptome and proteome

Supporting evidence

  • mG4TotiSCs retain karyotype stability and totipotent identity over passages
  • mG4TotiSCs transcriptomically cluster with 2-cell blastomeres and TotiSCs
  • scRNA-seq shows uniform totipotent identity across mG4TotiSCs
  • mG4TotiSCs acquire blastomere-like chromatin accessibility via remodeling
Main Claim 3 –

mG4TotiSCs form blastoids and generate embryonic and extraembryonic lineages

Supporting evidence

  • FC3 withdrawal reverses totipotency back to pluripotency
  • mG4TotiSC-derived blastoids yield ESC, TSC, and XEN lines
  • mG4TotiSC-derived blastoids implant and develop post-implantation in vivo
Main Claim 4 –

mG4TotiSCs contribute to embryonic and extraembryonic tissues in chimeras

Supporting evidence

  • mG4TotiSCs generate diverse trophoblast and yolk sac lineages

Abstract

Totipotent stem cells (TotiSCs) have significant application prospects in regenerative medicine and assisted reproductive technologies. The mRNAs of totipotency-related genes are rich in G-quadruplex (G4) structures, while the G4 density of pluripotency-related genes mRNAs is relatively low, suggesting a potential functional link between RNA G4s and the totipotent state. Nevertheless, how G4s are involved in the establishment or maintenance of mouse and human totipotency remains poorly understood. Here, we demonstrate that FC3, a small-molecule RNA G4 unwinder, enables efficient induction and maintenance of mouse and human TotiSCs (mG4TotiSCs and hG4TotiSCs). These FC3-induced TotiSCs closely recapitulate the molecular features of 2-cell-stage blastomeres via transcriptomic and epigenomic profiling. Functionally, both mG4TotiSCs and hG4TotiSCs exhibit totipotent capacity: they differentiate into embryonic and extraembryonic lineages in vitro and in chimeric embryos; moreover, they autonomously self-organize into blastocyst-like structures without exogenous signalling. Mechanistically, we identify that Gata2 mRNA, a G4-containing transcript, is essential for FC3-mediated reprogramming. Genetic disruption of Gata2 would abolish totipotency induction. Collectively, RNA G4 unwinding is a new regulatory axis governing totipotency acquisition and maintenance, providing insight into the functional interplay between nucleic acid secondary structures and cell fate plasticity.

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