Ectopic expression of the sperm-specific transcription factor HUAXU in egg cells, combined with clonal gametogenesis through MiMe mutations, establishes a synthetic apomixis system in hybrid rice that achieves >99% clonal seed production efficiency with near-normal fertility across multiple generations and diverse field environments, enabling stable fixation of heterosis through seeds at commercially viable scales.

Apomixis, a form of clonal seed reproduction, offers a transformative approach to agriculture by enabling the stable fixation of hybrid vigor and elite heterozygosity across generations. However, the practical implementation of synthetic apomixis has been hindered by highly variable clonal efficiency or significant yield penalties. In this study, through integrated transcriptomic analyses, we identified a sperm-specific transcription factor in rice that likely functions as a key initiator of embryogenesis. Ectopic expression of this factor in egg cells effectively induces parthenogenesis and produces haploid progeny. When combined with clonal gametogenesis, this system achieved nearly complete synthetic apomixis, with clonal seed production rates exceeding 99% across all derived hybrid rice lines. Moreover, we generated apomictic hybrid lines that not only consistently produced over 99% clonal seeds but also exhibited seed yields comparable to conventional F1 hybrids. These findings establish a scalable and agriculturally viable platform for synthetic apomixis, achieving stable fixation of heterosis through clonal seeds and paving the way for the commercial deployment of self-perpetuating hybrid crops.