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Programmable Aptamer-Embedded Circular RNAs for Targeted Antigen-Presenting Cells Immunotherapy
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Programmable Aptamer-Embedded Circular RNAs for Targeted Antigen-Presenting Cells Immunotherapy

Yu Zhang, Wenxi Wang, Xu Qian +33 more
September 2025
 ·
bioRxiv
 ·
DOI 
10.1101/2025.09.28.679023
94
%
Reproducible
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This paper passed independent validation.
QED's automated review checked the evidence supporting each claim, the statistical methods, and whether the results are reproducible from the data provided.

It ranks in the top 1% of preprints assessed in Bioengineering this quarter.
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Why this is interesting

By embedding cell-targeting aptamers directly into circular RNA scaffolds, this work demolishes the assumption that targeted RNA delivery requires nanocarriers, opening a carrier-free vaccine paradigm validated through a first-in-human cancer trial.

QED claims analysis

Summary

Programmable aptamer-embedded circular RNAs (Apt-circRNAs) enable carrier-free, targeted delivery of tumor antigens to antigen-presenting cells, inducing potent CD8+ T cell-mediated antitumor immunity across multiple preclinical cancer models and demonstrating excellent safety with robust antigen-specific immune responses in first-in-human clinical trials.

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Main Claim 1 –

PIE ribozyme synthesizes Apt-circRNAs with >80% circularization

Supporting evidence

  • Apt-circRNAs resist serum degradation >24 hours versus linear mRNA
  • Five waz plus four min2 aptamers maximize antigen presentation
Main Claim 2 –

Apt-circRNA vaccines match LNP-circRNA antitumor efficacy in mice

Supporting evidence

  • Apt-circRNAs accumulate in lymph nodes (~15.7 %ID/g at 24h)
  • Apt-circRNAs preferentially enter dendritic cells and lymph node APCs
  • Apt-circRNA activates PRR signaling and proinflammatory cytokine production
Main Claim 3 –

Multivalent Apt-circRNA vaccines treat diverse tumors, including poorly immunogenic

Supporting evidence

  • Apt-circRNA-KR2 induces polyfunctional KRAS-specific CD8+ and CD4+ T cells
  • CD8+ T cells drive Apt-circRNA antitumor therapeutic activity
Main Claim 4 –

Apt-circRNA-KR2 suppresses colorectal tumors in humanized mouse models

Supporting evidence

  • Apt-circRNA increases APCs and reduces cancer-associated fibroblasts in tumors
  • GLP rat studies show favorable Apt-circRNA-KR2 safety for translation

Abstract

The targeted delivery of mRNA to specific cell types in vivo remains a major unmet need in mRNA-based therapeutics. Conventional strategies rely on nanocarriers engineered with various modifications. However, these exogenous materials could cause adverse reactions, and their complex manufacturing processes often hinder clinical application. By leveraging the innate programmability of RNA sequences, we herein report a carrier-free, scalable, and programmable aptamer-embedded circular RNAs (Apt-circRNAs) design that confers targeting capability through the strategic incorporation of different aptamers at varying densities, while retaining circular RNA stability and protein production capability. Experimental results show that antigen-loaded Apt-circRNAs enable targeted delivery to antigen-presenting cells (APCs), drive endogenous antigen expression, activate antigen-specific T cells, and elicit potent immune responses that mediate clearance of both early-and late-stage tumors in mouse models. In humanized models of colorectal cancer, the combination of Apt-circRNA and PD-1 blockade produced synergistic antitumor effects and significantly reshaped the tumor microenvironment. In a first-in-human (FIH) clinical trial, Apt-circRNA vaccine encoding KRAS G12D/G12V neoantigens exhibited a favorable safety profile and induced robust immune activation, T cell mobilization, and neoantigen-specific immune responses. With this study, we have established a new paradigm in carrier-free, APC-targeted RNA vaccine design, offering a safe and effective platform for next-generation cancer immunotherapy.

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