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Mitochondrial control of glycerolipid synthesis by a PEP shuttle
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Mitochondrial control of glycerolipid synthesis by a PEP shuttle

Tadashi Yamamuro, Daisuke Katoh, Guilherme Martins Silva +12 more
March 2026
 ·
bioRxiv
 ·
DOI 
10.64898/2025.12.12.693842
94
%
Reproducible
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It ranks in the top 1% of preprints assessed in Cell Biology this quarter.
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Why this is interesting

By de-orphanizing SLC25A35 as the mitochondrial PEP transporter, this paper resolves how mitochondria fuel glycerolipid synthesis and establishes hepatic targeting of this shuttle as an actionable strategy against steatosis and Type 2 diabetes.

QED claims analysis

Summary

SLC25A35 functions as a pH gradient-dependent mitochondrial phosphoenolpyruvate transporter that controls glyceroneogenesis and glycerolipid synthesis in adipocytes and hepatocytes, and its inhibition ameliorates diet-induced hepatic steatosis and improves systemic glucose homeostasis by selectively limiting fatty acid esterification without impairing gluconeogenesis.

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Main Claim 1 –

Adipocyte mitochondria generate M+3 PEP via pyruvate-to-PEP bypass

Supporting evidence

  • PCK2 is dominant adipocyte PEPCK required for pyruvate-driven lipogenesis
Main Claim 2 –

Adipose-enriched SLC25A35 correlates with lipogenic gene expression

Supporting evidence

  • SLC25A35 localizes to the inner mitochondrial membrane
Main Claim 3 –

SLC25A35 loss causes mitochondrial PEP accumulation, indicating export defect

Supporting evidence

  • SLC25A35 knockout accumulates M+3 PEP without altering TCA oxidation
  • SLC25A35 knockout mitochondria show reduced PEP export activity
Main Claim 4 –

Purified SLC25A35 directly transports PEP in proteoliposomes

Supporting evidence

  • SLC25A35 preferentially transports PEP over TCA intermediates
  • SLC25A35 PEP transport is enhanced by low pH gradients
  • Modeling identifies stable PEP binding in SLC25A35 cavity
  • SLC25A35 residue mutations alter PEP transport activity

Abstract

Mitochondria provide a variety of metabolites, in addition to ATP, to meet cell-specific needs. One such metabolite is phosphoenolpyruvate (PEP), which contains a higher-energy phosphate bond than ATP and has diverse biological functions. However, how mitochondria-generated PEP is delivered to the cytosol and fulfills cell-specific requirements remains elusive. Here, we show that SLC25A35 regulates mitochondrial PEP efflux and glyceroneogenesis in lipogenic cells that utilize the pyruvate-to-PEP bypass. Reconstitution and structural studies demonstrated PEP transport by SLC25A35 in a pH gradient-dependent manner. Loss of SLC25A35 in adipocytes impaired the conversion of mitochondrial PEP into glycerol-3-phosphate, thereby reducing glycerolipid synthesis. Significantly, hepatic inhibition of SLC25A35 in obese mice alleviated steatosis and improved systemic glucose homeostasis. Together, these results suggest that mitochondria facilitate glycerolipid synthesis by providing PEP via SLC25A35, offering lipogenic mitochondria as a target to limit glycerolipid synthesis, a pivotal step in the pathogenesis of hepatic steatosis and Type 2 diabetes.

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