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Mechanism for oil-phase separation by the lipid droplet assembly complex
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Mechanism for oil-phase separation by the lipid droplet assembly complex

Pedro C. Malia, Siyoung Kim, Yohannes Ambaw +3 more
August 2025
 ·
bioRxiv
 ·
DOI 
10.1101/2025.08.12.669882
94
%
Reproducible
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Why this is interesting

This work establishes protein-catalyzed oil-phase separation as a fundamental cellular mechanism, revealing how a toroidal seipin–LDAF1 complex nucleates lipid droplets below spontaneous thresholds—overturning the assumption that lipid droplet biogenesis is a passive biophysical event.

QED claims analysis

Summary

The lipid droplet assembly complex (LDAC), composed of seipin and LDAF1, catalyzes triglyceride phase separation below the threshold of spontaneous demixing through a double-ring toroidal structure that creates a selective membrane chamber where LDAF1 binds and concentrates triglycerides while excluding phospholipids, thereby enabling organized oil droplet formation within the endoplasmic reticulum bilayer.

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Main Claim 1 –

LDAC catalyzes lipid droplet formation below spontaneous threshold

Supporting evidence

  • Triglyceride phase separation occurs above 4 mol% in membranes
Main Claim 2 –

Seipin–LDAF1 assemble as double-ring toroidal LDAC

Supporting evidence

  • Seipin–LDAF1 evolutionary couplings match structural interaction sites
  • Seipin–LDAF1 interface mutations disrupt LDAC assembly
  • Cysteine crosslinking validates predicted seipin–LDAF1 residue proximity
Main Claim 3 –

LDAC slows TG diffusion and concentrates TG versus seipin

Supporting evidence

  • Triglycerides bind conserved LDAF1 serines within LDAC chamber
  • Mutating conserved LDAF1 residues reduces triglyceride binding
  • All-atom simulations confirm TG accumulation and seipin conformational changes
Main Claim 4 –

Cellular LDAC preferentially associates with triglycerides over phospholipids

Abstract

Cells store metabolic energy as triglyceride (TG) oils in lipid droplets (LDs). LDs form de novo from the endoplasmic reticulum. How the lipid droplet assembly complex (LDAC), composed of seipin and LDAF1, catalyzes the organized formation of an oil phase in a membrane bilayer before spontaneous phase separation is triggered is unknown. Here, we reconstitute LD formation in vitro using purified LDAC and membranes containing physiologic levels of TG, demonstrating that the LDAC is both necessary and sufficient to catalyze oil-phase formation below the threshold of spontaneous phase separation. Structural studies of the LDAC reveal that LDAF1 forms a central ring within a seipin cage, creating a toroidal, membrane-spanning structure. Molecular dynamics simulations and biochemical assays show that this structure forms a selective chamber within the ER bilayer that limits phospholipids but allows TG to access a reaction compartment between the inner and outer rings of the LDAC. Within this compartment, TG interacts with LDAF1 and each other to form an oil phase to initiate LD formation. Thus, the LDAC acts as a protein catalyst for oil-phase separation in cells, revealing a fundamental mechanism for how cells resolve the biophysical challenge of storing oils within a hydrophilic environment in an organized manner.

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