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Env-antibody coevolution identifies B cell priming as the principal bottleneck to HIV-1 V2 apex broadly neutralizing antibody development
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Env-antibody coevolution identifies B cell priming as the principal bottleneck to HIV-1 V2 apex broadly neutralizing…

Rumi Habib, Ryan S. Roark, Hui Li +48 more
September 2025
 ·
bioRxiv
 ·
DOI 
10.1101/2025.05.03.652068
94
%
Reproducible
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Why this is interesting

Overturning the assumption that affinity maturation limits HIV bNAb elicitation, this study proves germline B cell priming is the true bottleneck—and delivers 12 precursor sequences and a viral biomarker to directly guide vaccine design.

QED claims analysis

Summary

B cell priming, rather than affinity maturation complexity, constitutes the primary bottleneck to V2 apex broadly neutralizing antibody elicitation during HIV-1 infection, as evidenced by the restriction of V2 apex bNAb development to specific germline-sensitive Envs, the rarity of required B cell precursor features in the naive repertoire, the rapid and permissive maturation pathways driven by limited C-strand mutations once priming occurs, and the absence of C-strand viral escape in animals lacking V2 apex bNAbs indicating failed priming rather than failed maturation.

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Main Claim 1 –

Specific HIV-1 Envs preferentially elicit V2 apex bNAbs

Supporting evidence

  • V2 apex bNAb UCAs have rare long, anionic CDRH3s
  • V2 apex bNAb priming often requires evolved glycan-deleted Env variants
Main Claim 2 –

V2 apex bNAb maturation driven by C-strand mutations 166-171

Supporting evidence

  • V2 apex bNAbs mature rapidly with minimal somatic hypermutation
  • V2 apex bNAb breadth arises via multiple permissive mutational paths
  • Increasing antibody affinity tracks V2 apex bNAb neutralization potency
  • Early antibody mutations structurally accommodate viral C-strand escape residues
Main Claim 3 –

C-strand selection sensitively and specifically indicates V2 apex bNAbs

Supporting evidence

  • V2 apex bNAb specificities confirmed by orthogonal validation assays

Abstract

Broadly neutralizing antibodies (bNAbs) are rarely elicited during HIV-1 infection. To identify obstacles to bNAb development, we longitudinally studied 122 rhesus macaques infected by one of 16 different simian-human immunodeficiency viruses (SHIVs). We identified V2 apex as the most common bNAb target and a subset of Envs that preferentially elicited these antibodies. In 10 macaques, we delineated Env-antibody coevolution from B cell priming to bNAb development. Antibody phylogenies revealed permissive developmental pathways guided by evolving Envs that contained few mutations in or near the V2 apex C-strand, which were a sensitive indicator of apex-targeted responses. The absence of such mutations reflected a failure in bNAb priming. These results indicate that efficiency of B cell priming, and not complexities in Env-guided affinity maturation, is the primary obstacle to V2 apex bNAb elicitation in SHIV-infected macaques and identify specific HIV-1 Envs to advance as novel vaccine platforms.

B cell priming is the primary bottleneck to HIV-1 V2 apex bNAb elicitation.

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