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A biased allosteric modulator functions as a molecular glue to induce β2AR dimerization
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A biased allosteric modulator functions as a molecular glue to induce β2AR dimerization

Jiemin Shen, Teja Nikhil Peddada, Konstantin E. Komolov +7 more
October 2025
 ·
bioRxiv
 ·
DOI 
10.1101/2025.10.21.683802
94
%
Reproducible
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It ranks in the top 1% of preprints assessed in Biochemistry this quarter.
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Why this is interesting

By showing that a small molecule induces β2AR dimerization to physically block arrestin while preserving G protein signaling, this work establishes ligand-driven receptor oligomerization as a generalizable new mechanism for biased GPCR pharmacology.

QED claims analysis

Summary

The β-arrestin-biased negative allosteric modulator AP-7-168 functions as a molecular glue that stabilizes β2-adrenergic receptor homodimerization through a symmetric TM3-TM4-TM5 interface, selectively preventing β-arrestin and GRK engagement via steric exclusion while permitting G protein coupling, thereby achieving biased signaling through ligand-induced quaternary structure modulation rather than conventional conformational selection.

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Main Claim 1 –

AP-7-168 preferentially inhibits β-arrestin over cAMP at β2AR

Main Claim 2 –

AP-7-168 molecular glue stabilizes β2AR homodimer via TM3–5

Supporting evidence

  • AP hydrogen-bonds E122 and flips orientation versus AS408
  • β2AR dimer interface uses TM3–5, loops, lipids, and H-bonds
  • smFRET confirms AP-stabilized β2AR dimer stability in membranes
  • AP-induced β2AR dimerization enlarges receptor nanoclusters in cells
  • AP-bound β2AR forms higher-order oligomers including dimer-of-dimers tetramers
Main Claim 3 –

β2AR dimer sterically blocks β-arrestin/GRK but allows G protein

Supporting evidence

  • β2AR dimers bind Gs with reduced affinity and altered kinetics
  • β2AR dimer favors inactive state with higher antagonist affinity
  • AP more strongly slows GTP turnover in β2AR dimers
  • AP stabilizes inactive TM6 and dampens β2AR conformational dynamics
  • DEER confirms AP promotes inactive β2AR conformations and clustering

Abstract

Family A G-protein coupled receptors (GPCRs) are typically described as monomers, yet growing evidence suggests they can form dimers with distinct signaling properties. The mechanisms and therapeutic potential of such dimerization, however, remain poorly understood. Here, we show that AP-7-168, an optimized derivative of a β-arrestin-biased negative allosteric modulator of the β2-adrenergic receptor (β2AR) that sustains bronchorelaxation in cell and tissue models, functions as a molecular glue to promote β2AR homodimerization. Cryo-EM structures reveal a unique binding mode in which two AP-7-168 molecules pack within a pocket formed by transmembrane helices 3, 4, and 5 of two protomers, stabilizing a dimeric conformation that selectively prevents β-arrestin coupling. In cells, AP-7-168 robustly induces β2AR dimerization and drives enlarged nanocluster formation. Combined with extensive functional studies, our findings unveil a novel allosteric mechanism by which a small molecule biases β2AR signaling through dimerization, highlighting ligand-induced dimerization as a strategy for GPCR modulation.

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